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36 research data, page 1 of 4

Positional information of single BAC assemblies of barley cv. Morex

IBSC, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
This table in TSV format contains positional information of single BAC assemblies such as POPSEQ genetic positions, positions in the physical map and the sequence-based overlap clusters.

w7984_meraculous_scaffolds

Martin Mascher, IPK Gatersleben, Corrensstraße 3, Stadt Seeland OT Gatersleben, D-06466, Germany (2014)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
Whole-genome shotgun of hexaploid wheat Synthetic W7984. The assembly was done with meraculous (Chapman et al., 2011, PLOS ONE) and consists of 6,870,110 scaffolds. The cumulative size of all scaffolds is 9,134,017,866 base pairs.

Redundant regions in the pseudomolecules of barley cv. Morex

IBSC, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
A BED file with coordinates of redundant regions in the pseudomolecule sequence.

A Preliminary Review of Allium subg. Melanocrommyum in Central Asia

Reinhard M. Fritsch, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
The review (288 pages A4) contains a taxonomic treatment of subg. Melanocrommyum (82 species and subspecies with about 40 synonyms, but no new taxa) affiliated to 17 sections and 21 subsections. Included is also subg. Porphyroprason (1 species, 2 synonyms). The publication starts with a Foreword, a General Introduction into the biological features of subg. Melanocrommyum, and an illustrated key (in color) for determination simultaneously in English and Russian on opposite pages. In the Taxono...

Phenotypic data of seven quality traits for a population of Central European wheat hybrids and their parental inbred lines

Guozheng Liu, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
This data resource contains the Best Linear Unbiased Estimates of 135 elite winter wheat (Triticum aestivum L.) lines adapted to Central Europe and 1,604 F1 hybrids derived from them. All genotypes were evaluated for seven quality traits in up to six environments (Zhao et al. 2015; Proceedings of the National Academy of Sciences of the United States of America 112:15624-15629; DOI: 10.1073/pnas.1514547112; Liu et al. 2016. Liu et al. 2016; PlosOne; DOI: 10.1371/journal.pone.0158635). The sedi...

Animated movie of the high-resolution CT images of the developing Brassica napus seed

Verboeven, Pieter (2012)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
Whole rapeseeds were scanned using a high resolution X-ray micro-CT system. The X-ray shadow projections of the 3-D object were digitized as 2048 x 2048 pixel images and were processed to obtain reconstructed cross-section images using a mathematical algorithm based on the filtered back-projection procedure implemented in the NRecon 1.6.2.0 software. This resulted in a 3-D stack of 1500 virtual sections, each consisting of 1500 × 1500 isotropic voxels of (1.7 µm3) with a linear X-ray attenuat...

Redundant regions in the split pseudomolecules of barley cv. Morex

IBSC, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
A BED file with coordinates of redundant regions in the split pseudomolecule sequence.

Technical validation experiment for reproducibility of high throughput plant phenotyping using LemnaTec automated image acquisition and IAP image analysis workflow

Astrid Junker, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
This dataset describes and quantifies the repeatability of the phenotyping workflow for the LemnaTec facility. Three single Arabidopsis thaliana plants in different developmental stages haven been subjected to repeated imaging over 50 rounds. The evaluation of geometric features extracted from the images using IAP and statistical post-processing revealed a high stability and reproducibility of the established imaging and analysis procedures.

15k SNP chip data for spring and winter wheat

Quddoos H. Muqaddasi, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2017)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
In total, 207 wheat genotypes (111 spring and 96 winter type) were analysed using a 15k Infinium SNP array, which is an optimized and reduced version of the 90k iSELECT SNP-chip described by Wang et al. (2014) Plant Biotechnol J 12:787-796. The development of the 15k SNP-chip and genotyping was performed by TraitGenetics GmbH (http://www.traitgenetics.com).

High-resolution GBS map of the Morex x Barke RIL population

IBSC, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), OT Gatersleben, Corrensstraße 3, Stadt Seeland, 06466, Germany (2016)
Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
A genetic map was constructed from genotyping-by-sequencing data of 1,613 recombinant inbred lines of the Morex x Barke population and comprises 2,637 markers. This file contains the genetic positions (chromosome, centiMorgen coordinate). Markers are given as SNP positions in the map-based reference assembly of barley cv. Morex.