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988 research data, page 1 of 99

Disease transmission and clinical pathways models

This repository contains the disease transmission and clinical pathways models used in our modelling study, "Reducing disease burden in an influenza pandemic by targeted delivery of%0A neuraminidase inhibitors%3A mathematical models in the Australian context", and is distributed under the terms of the GNU General Public License (version 3 or any later version).

The DataUp source code package

Strasser, C.; Kunze, J; Abrams, S.; Cruse, P (2014)
Publisher: ZENODO
The DataUp source code package includes three components: (1) the Excel add-in; (2) the public web client; and (3) the private web service that mediates between the add-in and client and the ONEShare repository.  All code is written in C# and relies on the .NET framework.


This is an archived version of the code, provided here as supplementary material as of the time of publication in the associated F1000 article (10.12688/f1000research.4702.1). For the latest version please visit the Github pages for the EpiCollect project: https://github.com/ImperialCollegeLondon/EcPlusAndroid.

GNU Parallel 20150322 ('Hellwig')

Tange, Ole (2015)
Publisher: Zenodo
GNU Parallel is a shell tool for executing jobs in parallel using one or more computers. A job is can be a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. A job can also be a command that reads from a pipe. GNU Parallel can then split the input and pipe it into commands in parallel.  If you use xargs and tee today you will find GNU Paral...

HSA: Version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

This upload contains the source code and user manual of HSA, the version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. HSA is a flexible tool that jointly analyzes multiple contact maps of Hi-C data to infer 3D chromatin structure of the genome. More information can be found at: http://ouyanglab.jax.org/hsa/. If you use the software, we would be grateful if you cited the following paper: Zou, C., Zhang, Y., Ouyang, Z. (...

Ebmdatalab/Trialstracker: First Release

Anna Powell-Smith (2016)
Publisher: Zenodo
Analysis and front-end code for http://trialstracker.ebmdatalab.net/

vsearch: VSEARCH version 1.0.16

Torbjørn Rognes; Frédéric Mahé; xflouris (2015)
Publisher: Zenodo
Integrate patches to the code from Debian


Jan Hermann (2016)
Publisher: Zenodo
Many Body Dispersion program

Scale: Modeling Allele-Specific Gene Expression By Single-Cell Rna Sequencing

Jiang, Yuchao; Zhang, Nancy; Li, Mingyao (2017)
Publisher: Zenodo
Allele-specific expression is traditionally studied by bulk RNA sequencing, which measures average expression across cells. Single-cell RNA sequencing (scRNA-seq) allows the comparison of expression distribution between the two alleles of a diploid organism and the characterization of allele-specific bursting. Here, we propose SCALE to analyze genome-wide allele-specific bursting, with adjustment of technical variability. SCALE detects genes exhibiting allelic differences in bursting paramete...

Sizing nanomaterials in bio-fluids by cFRAP enables protein aggregation measurements and diagnosis of bio-barrier permeability Matlab code source

Folder contents: 1. Code package for cFRAP-Sizing analysis including all of the code sourece of the software used to FRAP with MEManalysis.After adding the code to matlab searching path and type "rFRAP_MEM_GUI" in matlab command window to openthe main GUI for cFRAP-Sizing analysis. 2.Samples data of examples: the recovery FRAP images and analyzed data were used and genearated in the demostration of exampleshow to use the code in "user's guide file".