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Journal of Open Research Software
105 Publications
OpenAIRE 3.0 (OA, funding)


  • Tadarida: A Toolbox for Animal Detection on Acoustic Recordings

    Passive Acoustic Monitoring (PAM) recently extended to a very wide range of animals, but no available open software has been sufficiently generic to automatically treat several taxonomic groups. Here we present Tadarida, a software toolbox allowing for the detection and labelling of recorded sound events, and to classify any new acoustic data into known classes. It is made up of three modules handling Detection, Labelling and Classification and running on either Linux or Windows. This develop...

    Cambridge Rocketry Simulator – A Stochastic Six-Degrees-of-Freedom Rocket Flight Simulator

    The Cambridge Rocketry Simulator can be used to simulate the flight of unguided rockets for both design and operational applications. The software consists of three parts: The first part is a GUI that enables the user to design a rocket. The second part is a verified and peer-reviewed physics model that simulates the rocket flight. This includes a Monte Carlo wrapper to model the uncertainty in the rocket’s dynamics and the atmospheric conditions. The third part generates visualizations of th...

    CARMA: Software for Continuous Affect Rating and Media Annotation

    CARMA is a media annotation program that collects continuous ratings while displaying audio and video files. It is designed to be highly user-friendly and easily customizable. Based on Gottman and Levenson’s affect rating dial, CARMA enables researchers and study participants to provide moment-by-moment ratings of multimedia files using a computer mouse or keyboard. The rating scale can be configured on a number of parameters including the labels for its upper and lower bounds, its numerical ...

    VIGoR: Variational Bayesian Inference for Genome-Wide Regression

    Genome-wide regression using a number of genome-wide markers as predictors is now widely used for genome-wide association mapping and genomic prediction. We developed novel software for genome-wide regression which we named VIGoR (variational Bayesian inference for genome-wide regression). Variational Bayesian inference is computationally much faster than widely used Markov chain Monte Carlo algorithms. VIGoR implements seven regression methods, and is provided as a command line program packa...

    Open Source Software for Mapping Human Impacts on Marine Ecosystems with an Additive Model

    Andy Stock (2016)
    This paper describes an easy-to-use open source software tool implementing a commonly used additive model (Halpern et al., 'Science', 2008) for mapping human impacts on marine ecosystems. The tool has been used to map the potential for cumulative human impacts in Arctic marine waters and can support future human impact mapping projects by 1) making the model easier to use; 2) making updates of model results straightforward when better input data become available; 3) storing input data and inf...
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