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Name
IPK Gatersleben
Type
Data Repository
Items
12 Research Data
Compatibility
OpenAIRE Data (funded, referenced datasets)
OAI-PMH
http://oai.datacite.org/oai
More information
Detailed data provider information (Re3data)

 

  • No data provider publications found
  • A Preliminary Review of Allium subg. Melanocrommyum in Central Asia

    Fritsch, Reinhard M. (2016)
    Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
    The review (288 pages A4) contains a taxonomic treatment of subg. Melanocrommyum (82 species and subspecies with about 40 synonyms, but no new taxa) affiliated to 17 sections and 21 subsections. Included is also subg. Porphyroprason (1 species, 2 synonyms). The publication starts with a Foreword, a General Introduction into the biological features of subg. Melanocrommyum, and an illustrated key (in color) for determination simultaneously in English and Russian on opposite pages. I...

    Animated movie of the high-resolution CT images of the developing Brassica napus seed

    Verboeven, Pieter (2012)
    Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
    Whole rapeseeds were scanned using a high resolution X-ray micro-CT system. The X-ray shadow projections of the 3-D object were digitized as 2048 x 2048 pixel images and were processed to obtain reconstructed cross-section images using a mathematical algorithm based on the filtered back-projection procedure implemented in the NRecon 1.6.2.0 software. This resulted in a 3-D stack of 1500 virtual sections, each consisting of 1500 × 1500 isotropic voxels of (1.7 µm3) with a linear X-...

    Single nucleotide polymorphism datasets from 52 highly diverse accessions of the model allopolyploid plant Brassica napus.

    Schmutzer, Thomas (2015)
    Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
    Variant calling has been performed with three different prediction methods using the tools FaSD, Freebayes and samtools. This allowed us to use the variant caller count (VCC) as an additional confidence value for the prediction of variant positions (VP). The VCC indicates how many variant calling methods predict the particular VP. All displayed VPs succeed in at least one of the genotypes the following criteria: bi-allelic, SNP quality score >= 100, homozygous, read depth >= 4 and...

    Beta vulgaris spp. maritima draft genome sequence assembly and structural prediction of protein coding genes

    Himmelbauer, Heinz; Weisshaar, Bernd (2017)
    Publisher: Center for Biotechnology (CeBiTec), Bielefeld University, Sequenz 1, Bielefeld, 33615, Germany
    Dataset containing three files, namely contig and scaffold sequences (WB42_v2.fasta), an AGP file (WB42_v2.agp) to convert WB42_v2.fasta to a concatenated assembly version consisting of pseudochromosomes, and the result of a gene prediction performed with AUGUSTUS to describe Beta vulgaris spp. maritima protein coding genes, including genes which are not supported by mRNA evidence (WB42_v2.gff3).

    w7984_meraculous_scaffolds

    Mascher, Martin (2014)
    Publisher: Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland OT Gatersleben, Corrensstraße 3, 06466, Germany
    Whole-genome shotgun of hexaploid wheat Synthetic W7984. The assembly was done with meraculous (Chapman et al., 2011, PLOS ONE) and consists of 6,870,110 scaffolds. The cumulative size of all scaffolds is 9,134,017,866 base pairs.
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