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Mendeley Data
Data Repository
240 Research Data
OpenAIRE Data (funded, referenced datasets)
More information
Detailed data provider information (Re3data)


  • No data provider publications found
  • MHCflurry: open-source class I MHC binding affinity prediction

    O'Donnell, Timothy (2018)
    Publisher: Mendeley
    Predicting the binding affinity of major histocompatibility complex I (MHC I) proteins and their peptide ligands is important for vaccine design. We introduce an open-source package for MHC I binding prediction, MHCflurry. The software implements allele-specific neural networks that use a novel architecture and peptide encoding scheme. When trained on affinity measurements, MHCflurry outperformed the standard predictors NetMHC 4.0 and NetMHCpan 3.0 overall and particularly on non-9-mer peptid...

    The same hippocampal CA1 population simultaneously codes temporal information over multiple timescales

    Mau, William (2018)
    Publisher: Mendeley
    One-photon calcium imaging data in right CA1 of mice traversing a rectangular track and treadmill run for 10 s. Contact William Mau () for details.

    SOFIE - WACCM NO Comparison

    Hendrickx, Koen (2018)
    Publisher: Mendeley
    Simulations of nitric oxide and temperature by the Whole Atmosphere Community Climate Model with Specified Dynamics, at the nearest geolocation and UT as the Solar Occultation For Ice Experiment observation. One model run is with the standard eddy diffusion (Prandtl number 4) and one run with enhanced eddy diffusion (Prandtl number 2).

    Deep profiling of mouse splenic architecture with CODEX multiplexed imaging.

    Goltsev, Yury (2018)
    Publisher: Mendeley
    A highly multiplexed cytometric imaging approach, called CO-Detection by indEXing (CODEX), is used here to create multidimensional imaging datasets of normal mouse and lupus (MRL/lpr) spleens. In this procedure, antibody binding events are rendered iteratively using DNA barcodes, fluorescent dNTP analogs, and an in-situ polymerization-based indexing procedure. An algorithmic pipeline enabling single cell antigen quantification in tightly packed tissues was developed and used to overlay well k...

    MultivariateResidues: A Mathematica package for computing multivariate residues

    Larsen, Kasper J. (2018)
    Publisher: Mendeley
    Multivariate residues appear in many different contexts in theoretical physics and algebraic geometry. In theoretical physics, they for example give the proper definition of generalized-unitarity cuts, and they play a central role in the Grassmannian formulation of the S-matrix by Arkani-Hamed et al. In realistic cases their evaluation can be non-trivial. In this paper we provide a Mathematica package for efficient evaluation of multidimensional residues based on methods from computational al...
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