LOGIN TO YOUR ACCOUNT

Username
Password
Remember Me
Or use your Academic/Social account:

CREATE AN ACCOUNT

Or use your Academic/Social account:

Congratulations!

You have just completed your registration at OpenAire.

Before you can login to the site, you will need to activate your account. An e-mail will be sent to you with the proper instructions.

Important!

Please note that this site is currently undergoing Beta testing.
Any new content you create is not guaranteed to be present to the final version of the site upon release.

Thank you for your patience,
OpenAire Dev Team.

Close This Message

CREATE AN ACCOUNT

Name:
Username:
Password:
Verify Password:
E-mail:
Verify E-mail:
*All Fields Are Required.
Please Verify You Are Human:
fbtwitterlinkedinvimeoflicker grey 14rssslideshare1

ELIXIR-EXCELERATE

Title
ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences.
Funding
EC | H2020 | RIA
Call
H2020-INFRADEV-1-2015-1
Contract (GA) number
676559
Start Date
2015/09/01
End Date
2019/08/31
Open Access mandate
yes
Data Pilot
no
Organizations
NBIC, UiO, UPF, VIB, CSIC, CIRAD, SIB, UOXF, IRB BARCELONA, CNR, EARLHAM, FPS, INESC ID, UiB, UTARTU, FORTH, NTNU, UU, INRA, CRG, CCMAR, LIU, UiT, BSC, UCAM, UMA, IP, IMIM, FCG-IGC, BSRCAF, UEDIN, EMBL, NIB, UL, IBET, DTU, Athena RC, CNIO, UMAN, HWU, FVIB, CSC, UOCHB AVCR, HUJI, CESNET, MU, Le CNRS
More information
Detailed project information (CORDIS)

 

  • ELIXIR Advanced workshops on genome annotation

    Henrik Lantz; Bengt Persson (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Genome assembly and genome annotation constitute areas where significant resources, both manpower and computational resources, are needed to come to the successful conclusion of a project. Experience, both organism-specific but also general knowledge of assembly and annotation, is necessary and this is often slowly built up over the years when working continuously on similar projects. Every project is unique, as all organisms are different and variety of different data types and tools exist. ...

    ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services [version 1; referees: 1 approved, 2 approved with reservations]

    Espen Mikal Robertsen; Hubert Denise; Alex Mitchell; Robert D. Finn; Lars Ailo Bongo; Nils Peder Willassen (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Metagenomics, the study of genetic material recovered directly from environmental samples, has the potential to provide insight into the structure and function of heterogeneous microbial communities. ?There has been an increased use of metagenomics to discover and understand the diverse biosynthetic capacities of marine microbes, thereby allowing them to be exploited for industrial, food, and health care products. This ELIXIR pilot action was motivated by the need to establish dedicated data ...

    The metagenomic data life-cycle: standards and best practices

    Ten Hoopen , Petra; Finn , Robert D.; Bongo , Lars Ailo ,; Corre , Erwan; Fosso , Bruno; Meyer , Folker; Mitchell , Alex; Pelletier , Eric; Pesole , Graziano; Santamaria , Mónica; Willassen , Nils Peder ,; Cochrane , Guy (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    International audience; Metagenomics data analyses from independent studies can only be compared if the analysis workflows are described in a harmonized way. In this overview, we have mapped the landscape of data standards available for the description of essential steps in metagenomics: (i) material sampling, (ii) material sequencing, (iii) data analysis, and (iv) data archiving and publishing. Taking examples from marine research, we summarize essential variables used to describe material s...

    Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes

    Dopazo, Joaquin; Erten, Cesim (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Background Identification of driver genes related to certain types of cancer is an important research topic. Several systems biology approaches have been suggested, in particular for the identification of breast cancer (BRCA) related genes. Such approaches usually rely on differential gene expression and/or mutational landscape data. In some cases interaction network data is also integrated to identify cancer-related modules computationally. Results We provide a framework for the comparative ...

    The FAIR Guiding Principles for scientific data management and stewardship

    Wilkinson, Mark Denis; Dumontier, Michel; Aalbersberg, IJsbrand Jan; Appleton, Gabrielle; Axton, Myles; Baak, Arie; Blomberg, Niklas; Boiten, Jan-Willem; Da Silva Santos, Luiz Bonino; Bourne, Philip E.; Bouwman, Jildau; Brookes, Anthony J.; Clark, Tim; Crosas, Mercè; Dillo, Ingrid;... (2016)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    textabstractThere is an urgent need to improve the infrastructure supporting the reuse of scholarly data. A diverse set of stakeholders—representing academia, industry, funding agencies, and scholarly publishers—have come together to design and jointly endorse a concise and measureable set of principles that we refer to as the FAIR Data Principles. The intent is that these may act as a guideline for those wishing to enhance the reusability of their data holdings. Distinct from peer initiative...

    ELIXIR-EXCELERATE: Deliverable 6.2: Report on comprehensive metagenomic data standards environment

    Guy Cochrane; Rob Finn; Nils Peder Willassen; Lars Ailo Bongo; Monica Santamaria; Bruno Fosso; Eric Pelletier; Erwan Corre; Alex Mitchell; Simon Potter (2018)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    We have previously reviewed data standards and best practices in marine metagenomics and have published our review and three core recommendations (ten Hoopen et al., 2017). On our first recommendation - that scientists comply with data standards and recommended best practices, we assess in this Annex the status across sampling, sequencing, analysis and results archiving stages of metagenomics studies. We report for our second recommendation - that computational analysis process be describ...

    MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data

    Fosso, B.; Santamaria, M.; D?Antonio, M.; Lovero, D.; Corrado, G.; Vizza, E.; Passaro, N.; Garbuglia, A.R.; Capobianchi, M.R.; Crescenzi, M.; Valiente, G.; Pesole, G. (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Abstract Summary: Shotgun metagenomics by high-throughput sequencing may allow deep and accurate characterization of host-associated total microbiomes, including bacteria, viruses, protists and fungi. However, the analysis of such sequencing data is still extremely challenging in terms of both overall accuracy and computational efficiency, and current methodologies show substantial variability in misclassification rate and resolution at lower taxonomic ranks or are limited to specific life do...

    ELIXIR Handbook of Operations

    Niklas Blomberg; Martin Cook; Pablo Roman Garcia; Stephanie Suhr; Premysl Velek; Montserrat Gonzalez; Susanna Repo (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    ELIXIR is a distributed infrastructure, built around existing centres of excellence throughout the European member states represented through national Nodes, and incorporating the internationally supported European Bioinformatics Institute (EMBL-EBI). There are currently over 160 institutes from 20 member states taking part in ELIXIR. Operating a large, distributed, ‘virtual’ organisation such as ELIXIR requires strong coordination capabilities with clear roles and effective and simple proces...

    ReGaTE: Registration of Galaxy Tools in Elixir

    Doppelt-Azeroual, Olivia; Mareuil, Fabien; Deveaud, Eric; Kalaš, Matúš; Soranzo, Nicola; van den Beek, Marius; Grüning, Björn; Ison, Jon; Ménager, Hervé (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Background:Bioinformaticians routinely use multiple software tools and data sources in their day-to-day work, and have been guided in their choices by a number of cataloguing initiatives. The ELIXIR Tools and Data Services Registry ( bio.tools ) aims to provide a central information point, independent of any specific scientific scope within bioinformatics or technological implementation. Meanwhile, efforts to integrate bioinformatics software in workbench and workflow environments have accele...

    The MAR databases: development and implementation of databases specific for marine metagenomics

    Klemetsen, Terje; Raknes, Inge A; Fu, Juan; Agafonov, Alexander; Balasundaram, Sudhagar V; Tartari, Giacomo; Robertsen, Espen; Willassen, Nils P (2017)
    Projects: EC | ELIXIR-EXCELERATE (676559)
    Abstract We introduce the marine databases; MarRef, MarDB and MarCat (https://mmp.sfb.uit.no/databases/), which are publicly available resources that promote marine research and innovation. These data resources, which have been implemented in the Marine Metagenomics Portal (MMP) (https://mmp.sfb.uit.no/), are collections of richly annotated and manually curated contextual (metadata) and sequence databases representing three tiers of accuracy. While MarRef is a database for completely sequence...
  • No project research data found
  • Scientific Results

    Chart is loading... It may take a bit of time. Please be patient and don't reload the page.

    PUBLICATIONS BY ACCESS MODE

    Chart is loading... It may take a bit of time. Please be patient and don't reload the page.

    Publications in Repositories

    Chart is loading... It may take a bit of time. Please be patient and don't reload the page.

Share - Bookmark

App Box