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Gifford, Robert J.; Liu, Tommy F.; Rhee, Soo-Yon; Kiuchi, Mark; Hue, Stephane; Pillay, Deenan; Shafer, Robert W. (2009)
Publisher: Oxford University Press
Journal: Bioinformatics
Languages: English
Types: Article
Subjects: Sequence Analysis, Applications Note

Classified by OpenAIRE into

mesheuropmc: education, health care economics and organizations, health services administration, natural sciences
ACM Ref: ComputingMethodologies_PATTERNRECOGNITION, GeneralLiterature_MISCELLANEOUS
Summary: The calibrated population resistance (CPR) tool is a web-accessible program for performing standardized genotypic estimation of transmitted HIV-1 drug resistance. The program is linked to the Stanford HIV drug resistance database and can additionally perform viral genotyping and algorithmic estimation of resistance to specific antiretroviral drugs. Availability: http://cpr.stanford.edu/cpr/index.html Contact:
  • The results below are discovered through our pilot algorithms. Let us know how we are doing!

    • Bennett,D.E. et al. (2008a) The World Health Organization's global strategy for prevention and assessment of HIV drug resistance. Antivir. Ther., 13(Suppl. 2), 1-13.
    • Bennett,D.E. et al. (2008b) Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment. Antivir. Ther., 13 (Suppl. 2), 25-36.
    • Bertagnolio,S. et al. (2007) HIV-1 drug resistance surveillance using dried whole blood spots. Antivir. Ther., 12, 107-113.
    • Gifford,R.J. et al. (2008) Sequence editing by Apolipoprotein B RNA-editing catalytic component and epidemiological surveillance of transmitted HIV-1 drug resistance. AIDS, 22, 717-725.
    • Gilks,C.F. et al. (2006) The WHO public-health approach to antiretroviral treatment against HIV in resource-limited settings. Lancet, 368, 505-510.
    • Holmes,R.K. et al. (2007) APOBEC-mediated viral restriction: not simply editing? Trends Biochem. Sci., 32, 118-128.
    • Huang,X. and Zhang,J. (1996) Methods for comparing a DNA sequence with a protein sequence. Comput. Appl. Biosci., 12, 497-506.
    • Kuritzkes,D.R. et al. (2008) Preexisting resistance to nonnucleoside reversetranscriptase inhibitors predicts virologic failure of an efavirenz-based regimen in treatment-naive HIV-1-infected subjects. J. Infect. Dis., 197, 867-870.
    • Little,S.J. et al. (2002) Antiretroviral-drug resistance among patients recently infected with HIV. N. Engl. J. Med., 347, 385-394.
    • Liu,T.F. and Shafer,R.W. (2006) Web resources for HIV type 1 genotypic-resistance test interpretation. Clin. Infect. Dis., 42, 1608-1618.
    • Myers, et al. (2005) A statistical model for HIV-1 sequence classification using the subtype analyser (STAR). Bioinformatics, 21, 3535-3540.
    • Pillay,D. (2004) Current patterns in the epidemiology of primary HIV drug resistance in North America and Europe. Antivir. Ther., 9, 695-702.
    • Rhee,S.Y. et al. (2003) Human immunodeficiency virus reverse transcriptase and protease sequence database. Nucleic Acids Res., 31, 298-303.
    • Shafer,R.W. et al. (2007) HIV-1 protease and reverse transcriptase mutations for drug resistance surveillance. AIDS, 21, 215-223.
    • Shafer,R.W. et al. (2008) Consensus drug resistance mutations for epidemiological surveillance: basic principles and potential controversies. Antivir. Ther., 13(Suppl. 2), 59-68.
    • SPREAD Programme (2008) Transmission of drug-resistant HIV-1 in Europe remains limited to single classes. AIDS, 22, 625-635.
    • UK Collaborative Group on HIV Drug Resistance (2007) Evidence of a decline in transmitted HIV-1 drug resistance in the United Kingdom. AIDS, 21, 1035-1039.
    • van de Vijver,D.A.M.C et al. (2007) The epidemiology of transmission of drug resistant HIV-1. In Leitner,T. et al. (eds) HIV Sequence Compendium 2007. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, NM.
    • Yerly,S. et al. (2007) Transmission of HIV-1 drug resistance in Switzerland: a 10-year molecular epidemiology survey. AIDS, 21, 2223-2229.
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