LOGIN TO YOUR ACCOUNT

Username
Password
Remember Me
Or use your Academic/Social account:

Congratulations!

You have just completed your registration at OpenAire.

Before you can login to the site, you will need to activate your account. An e-mail will be sent to you with the proper instructions.

Important!

Please note that this site is currently undergoing Beta testing.
Any new content you create is not guaranteed to be present to the final version of the site upon release.

Thank you for your patience,
OpenAire Dev Team.

Close This Message

CREATE AN ACCOUNT

Name:
Username:
Password:
Verify Password:
E-mail:
Verify E-mail:
*All Fields Are Required.
Please Verify You Are Human:

OpenAIRE is about to release its new face with lots of new content and services.
During September, you may notice downtime in services, while some functionalities (e.g. user registration, login, validation, claiming) will be temporarily disabled.
We apologize for the inconvenience, please stay tuned!
For further information please contact helpdesk[at]openaire.eu

fbtwitterlinkedinvimeoflicker grey 14rssslideshare1
Daniela Álvarez Yepes; Pablo Andrés Gutiérrez Sánchez; Mauricio Marín Montoya (2016)
Publisher: Universidad Nacional de Colombia
Journal: Acta Biológica Colombiana
Languages: English
Types: Article
Subjects: papa, Potyvirus, NGS, RT-qPCR, Biology (General), DAS-ELISA, QH301-705.5
Viral diseases are one of the most limiting problems in the production of potato worldwide. Solanum phureja constitutes one of the most susceptible materials to viral diseases in Colombia; however, there are few studies on viruses infecting this crop. In the current study, we performed a molecular characterization of Potato virus V (PVV) that infects S. phureja, using different potato plots located in the province of Antioquia, using Next-Generation Sequencing (NGS), DAS-ELISA, real time RT-PCR (RT-qPCR) and RT-PCR. Results revealed variable levels of incidence among plots (6.7 %-86 %) and the presence of two slightly different variants (Var_A and Var_B) present in approximately 72 %:28 % ratio. These PVV strains have a genome of 9828 nt codifying for a polyprotein of 3066 aa and share high nucleotide sequence identity (99,7 % in their complete genome) with respect to PVV-Phureja, recently described in Colombia, but are very divergent with respect to currently available PVV genomes (82-83 %). The genome information was used to design two sets of primers, useful in the specific detection of this virus in S. phureja leaf samples through RT-PCR (459 bp) and RT-qPCR (89 bp, Ct=12.08-21.86; Tm=78.7 °C-80.2 °C). This study underscores the importance of including diagnostics of PVV in S. phureja tuber-seed certification programs in Colombia.

Share - Bookmark

Cite this article

Collected from

Cookies make it easier for us to provide you with our services. With the usage of our services you permit us to use cookies.
More information Ok