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Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Navas, Jose; Kopylova, Evguenia; Ackermann, Gail (2017)
Languages: English
Types: Article
Subjects: microbiome, amplicon sequencing, environmental microbiology
Overview This archive contains data and results from the meta-analysis of the Earth Microbiome Project (EMP) 16S Release 1, which was published in Nature (http://doi.org/10.1038/nature24621). The files include EMP-wide study and sample metadata, observation tables and information (trees and taxonomies), alpha- and beta-diversity results, observation summaries for trading cards, and the Redbiom database at time of publication. Files * Study metadata - emp_studies.csv * Sample metadata - emp_qiime_mapping_release1_20170912.tsv - emp_qiime_mapping_qc_filtered_20170912.tsv - emp_qiime_mapping_subset_10k_20170912.tsv - emp_qiime_mapping_subset_5k_20170912.tsv - emp_qiime_mapping_subset_2k_20170912.tsv * Observation tables (.biom) and summaries (.summary.txt) - emp_deblur_90bp.release1.biom - emp_deblur_90bp.release1.summary.txt - emp_deblur_100bp.release1.biom - emp_deblur_100bp.release1.summary.txt - emp_deblur_150bp.release1.biom - emp_deblur_150bp.release1.summary.txt - emp_cr_gg_13_8.release1.biom - emp_cr_gg_13_8.release1.summary.txt - emp_cr_silva_16S_123.release1.biom - emp_cr_silva_16S_123.release1.summary.txt - emp_or_gg_13_8.no_sample_singletons.biom - emp_or_gg_13_8.no_sample_singletons.summary.txt * Observation information (sequences, trees, taxonomies) - emp_observation_info_deblur.tar.gz - emp_observation_info_cr_gg.tar.gz - emp_observation_info_cr_silva.tar.gz - emp_observation_info_or_gg.tar.gz * Alpha-diversity results - emp_alpha_div.tar.gz * Beta-diversity results - emp_deblur_unifrac_dist.tar.gz - emp_deblur_unifrac_pc.tar.gz - emp_deblur_unifrac_emperor.tar.gz - emp_90_gg_1k_unweighted_unifrac.txt.gz - emp_150_gg_1k_unweighted_unifrac.txt.gz * Observation summaries for trading cards - otu_summary.emp_deblur_90bp.subset_2k.rare_5000.tsv - otu_summary_no_chl.emp_deblur_90bp.subset_2k.rare_5000.tsv - emp_2k_subset_blank_stats.tsv * Redbiom database - emp_redbiom.rdb
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